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The correlation relationships between specified genes were visualized using the Cytoscape software82.
The connections among the hub genes were visualized as an unsigned network by Cytoscape69.
Fold changes of selected genes were visualized in a heat map diagram.
Consensus histone modification profiles for subsets of "ON/OFF" genes were visualized based on expression levels as described above.
Interconnected KEGG [40] pathways enriched in deregulated genes were visualized with network-based approaches using Cytoscape [41] with the ClueGo plug-in [42].
The selected genes were visualized in a graphic heatmap.
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The positions of differentially expressed genes was visualized using the GenomeViz software [38].
First, the top 10 most significant genes are visualized in the graph.
The relative expression for these 50 genes was visualized using Ingenuity Pathway Analysis.
The distribution of the anchored genes is visualized along the chromosomes by using heat maps.
The expression patterns of the predicted liver-specific genes are visualized with the heat map.
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