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Carbapenemase- and extended-spectrum β-lactamase (ESBL -encoding gESBL -encodingched for usingenes and sequencing.
The horizontal line represents the 0.01 FDR threshold and defines the genomic regions where candidate genes were searched for.
The M. incognita ortholog genes were searched in the genome (http://www6.inra.fr/meloidogyne_incognita), and specific primers were designed for RT-qPCR.
Overrepresented and underrepresented categories of genes were searched in hypomethylated and hypermethylated genes.
Conserved putative grape genes were searched by the BLAST program with rice, poplar and Arabidopsis as references.
Differentially expressed genes were searched for the presence of potential QREs in their sequences using TFBS module [46].
Regulated genes were searched with the Significance Analysis of Microarray version 1.26, a nonparametric procedure that handles multiple testing [25].
Full length cDNA sequences of genes were searched using the BLASTX algorithm against NR Database from the National Center for Biotechnology Information (NCBI).
Conserved transcription-related motifs, shared by the T. thermophila MTT1, MTT3 and MTT5 genes, were searched for in their 5'- and 3'- flanking regions (see Materials and Methods).
Signature genes were searched but not found.
The tRNA genes were searched using tRNAscan-SE [ 28].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com