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They used computational analysis involving a range of criteria, including whether the genes were located in defence islands in many different types of bacterium.
Doron and colleagues analysed 14,083 protein families, and focused on those in which at least 65% of the encoding genes were located near known defence systems.
On the other hand, more than half of these genes were located at very GC-rich (50 55 GC%) regions.
We further investigated the nature of gene fusions that are commonly found in prostate cancer and asked if the genes were located in regions that displayed differences in replication timing.
The upstream retained region was extended from 6 bp to 100 bp when two neighboring genes were located head-to-head in opposite orientation to prevent deletion of potential promoters for flanking genes.
Eight of these genes were located within AD susceptibility loci.
Among them, three genes were located inside or relatively close to the mapped locus.
These repeated genes were located on chromosomes V and XII and the two leu2- alleles were located on chromosomes III and XII.
Moreover, of the five germin genes induced by the fog treatment, four genes were located on Chromosome 8, and two genes (LOC_Os08g09010, and 09060) were members of OsGER4.
Pseudomonas putida ND6 was identified as a naphthalene degrading bacterium, in which naphthalene degradation genes were located on a plasmid (Dennis et al. [2004]; Li et al. [2002]).
It is interesting that none of the previously identified candidate genes were located in this region.
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