Keywords potentially linked with genes were extracted from these abstracts in information extraction section.
The differentially accessible genes were extracted using DESeq2.
The assigned KO numbers and path numbers of S. sanguinis genes were extracted.
Single-copy orthologous genes were extracted from the clustering results using an in-house script.
The 393 methylation sites in KDM genes were extracted from epigenome-wide datasets and analyzed by weighted random forest (Ranger) in discovery phase and validation dataset, respectively.
All genes were extracted and translated into protein sequences and the protein sequences were compared by using all-by-all BLASTP (E-value = 1 × 10−5).
They have played just 14 games in this season, but the plot lines have an uncanny similarity to 1998, as if genes were extracted from that team and injected into the first evolving cells of these Yankees.
To co-express the MotAB and MotPS stators together with the sticky flagellar filament, each stator genes were extracted from each plasmid by digesting with and subcloned into the XmaI and SphI sites of the pDR-hagsticky plasmid.
To obtain a functional description of the lists of Ancestral HG and Novel HG for each opisthokontan node, their fruit fly genes were extracted and analysed in Panther GO11.
For the analysis of transposable element content in up- and downstream regions of genes, 10 kb immediately flanking the predicted coding sequences of all high-confidence genes were extracted from the genome assembly.
The plasmids with correct target genes were extracted using TIANprep MINI plasmid kit (Tiangen, Beijing, China).
