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Then the genes were categorized using Gene Ontology annotations program (http://apps1.niaid.nih.gov/David/gochart).nih.gov/David/gochart
The 37 target genes were categorized into 13 groups based on their COG functional annotations.
These genes were categorized into four subgroups based on phylogenetic analyses.
These genes were categorized into 13 different COG functional categories including energy production and conversion (C), carbohydrate metabolism and transport (G), cell wall/membrane/envelope biogenesis (M), and inorganic ion transport and metabolism (P).
When genes were categorized by expression level, we found even greater differences in neutral mutations between the diploid species and the polyploid subgenomes compared with the genome-wide data.
To identify the significant biological functions modulated by aspartame or sugar, aspartame-specific genes and sugar-specific genes were categorized based upon their functions and subsequently, the significance was tested with Fisher's exact test (Fig. 3b).
The abundant genes were categorized into 22 major functional groups (percentage of expressed genes >10) based on the GO categories.
Based upon the assigned function, the differentially expressed genes were categorized into 14 different functional categories (Fig. 1; Tables 1 and 2).
Functional properties of the differentially expressed or methylated genes were categorized using the BiNGO Cytoscape plugin as described previously (Maere et al., 2005).
The 'differentially expressed' genes were categorized into pathways using Virtual Plant 1.3 (Katari et al. 2010) and mapped onto functional categories in the MapMan (Thimm et al. 2004).
The five xyloglucan fucosyltransferase genes were categorized into three groups based on their protein sequence similarities (Additional file 9: Figure S2).
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