In addition to mutations in the tubulin-encoding TUB genes, we found mutations in the CIN1, CIN2, and CIN4 genes.
Among the differentially expressed and spliced genes we found serine/arginine-rich (SR) genes, which are known to regulate AS in cells.
Among upregulated genes we found several members of the Wnt signaling pathway like Sox15, Wisp2, Nr4a1, Prox1, and Mmp1227,28,29.
"Many of the genes we found were not obvious candidates for the disease," notes Tarpey.
"In your genes we found 8,628 variations in the letters of your DNA as compared to the reference human genome.
At the time of building RiceCyc, of the total 47,894 rice genes, we found 29,753 genes to have GO annotations (Ashburner, Ball et al. 2000).
By analyzing their late pollen-preferred genes, we found that at least 17.7% of the top 300 in each cultivar do not overlap.
Among the common deregulated genes we found also 49 early embryonic genes (Figure 4B).
Among these genes we found a gene subset that is directly related to AD.
Among the significantly upregulated genes we found bop, bat, crtB1, and crtB2.
Amongst the IFN-stimulated genes, we found both positive and negative effectors.
