For the RT-qPCR confirmed genes we analyzed their response to JH.
Here, to find novel genes, we analyzed all the transcripts expressed in normal human prostate cells using this microarray.
To obtain a geographically integrated survey of the diversity in archaeal amoA genes, we analyzed clone libraries representing each of the four distinct desert systems across the western U.S. (Chihuahuan, Great Basin, Colorado Plateau, and Sonoran).
In order to comment upon the basis of stress-regulation of the aforesaid yield-related genes, we analyzed their upstream region for the presence of stress-related cis-elements.
To test whether these compounds modify the expression of specific genes, we analyzed the effect on the gene expression in AZ521 cells by differential display analysis using the compounds showing different characteristics in the recognition of specific DNA sequence.
2) Addition of prioritized genes: We analyzed GDS2922 and GSE9106 separately using limma [48] and RankProd [49] applying default settings within the statistical analysis program R [50].
To further evaluate the role of Bcd in transcriptional decisions of its target genes, we analyzed properties of the nuclei within individual bins along the A-P axis.
To predict the function of LK genes, we analyzed the orthologs or the most similar homologs of some known LK genes in rice (Table S3).
To investigate whether alterations in amounts of splicing factors are followed by changes in alternative processing of target genes, we analyzed their splicing patterns (Fig. 5).
To gain further insight into the biological roles of the common genes, we analyzed the gene ontology (GO) terms associated with them by using the FatiGO+ software [35].
Three of the four genes we analyzed were misregulated in the LMNA E161K mutant fibroblasts in the same direction as on the microarray.
