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The pattern of regulation of pro- and anti-inflammatory genes was consistent with cytokine array analysis.
This larval specific overexpression manner of the two genes was consistent with the characteristic of stage-dependent resistance of JPal-per strain previously reported, suggesting that the two P450s, CYP9M10 and CYP4H34, are involved in pyrethroid detoxification in JPal-per strain.
The down-regulation of the photosynthesis related genes was consistent with the reduction in photosynthetic activity during type III necrosis, and the reduction occurred prior to the appearance of necrotic symptoms on the leaves exhibiting type III necrosis.
84 genes were differentially expressed in both D9 and D4 D9 mutants; interestingly, only BCAM1697 resulted to be up-regulated in D9 and down-regulated in the double mutant, while the expression profile of all the other genes was consistent in both strains, 63 being down-regulated and 21 up-regulated (Table S1, Figure 1).
The expression of three other marker genes was consistent with previously described results [27] in fixJ and bacA nodules: MtCAM1 (MT007325) and MtN31 (MT007417) are transcribed in fixJ but not in bacA nodules, whereas MtLEC4 (MT007335) is expressed in both conditions.
Overall, the identity and function of these genes was consistent with our hypothesis.
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The complex patterns of introgression observed in domestication genes are consistent with multiple independent rice domestication events.
Thus, the RT-PCR results for these genes were consistent with the microarray data.
The high expression of many IAP genes is consistent with their role in maintaining the symbiont population in the gill of B. platifrons (Fig. 4b).
The expression patterns of these genes were consistent with the active SCW biosynthesis and substantial lignification in the MI and BI sections.
Downregulation of cholesterolgenic genes and upregulation of fatty acid oxidative genes were consistent with SREBP-2 and PPARα control, respectively.
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