A total of 88 genes (represented by 88 unique probes) were thereby identified as PFS-related profile.
Genes represented by blue dots in the graphs were statistically most likely to be driver genes.
The rest of the genes represented by multiple probes showed consistent expression patterns among the probes.
The array platform included probe sets corresponding to 19851 human genes, with most genes represented by multiple probe sets [40].
The OsOPT genes represented by duplicated chromosomal segments between two chromosomes were connected by lines and the OsOPT genes that resulted from tandem duplication were contained in boxes.
Of the upregulated genes represented by multiple probes on the array, 54 showed varying expression patterns among the probes (Figure 1).
Furthermore, genes represented by network peripherals-A tend to be associated with lower-level biological processes.
For genes represented by multiple arrayed cDNAs, the average log2 ratio was used.
Results show that genes represented by highly-connected nodes are more likely to be engaged in higher-level biological process terms (as defined by the Gene Ontology), than genes represented by low-connectivity nodes.
On the contrary, genes represented by network peripherals-A and -B tend to have higher range of 'di's values.
Putative promoter regions of all genes represented by cDNA sequences longer than 700 bp were included in our analysis.
