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This list of genes is given in Additional file 5 and a schematic representing the reactions and processes which are up/down-regulated are shown in Figure 5. Figure 5 Schematic diagram showing common genes which are up/down-regulated (fold change ≥ 2) during GFP and xylanase but not in rhIFN-β, along with the processes and reactions they are involved.

The schematic of the processes and reactions catalyzed by this common set of differentially expressed genes is given in Figure 3. Figure 3 Schematic diagram showing common genes which were up/down-regulated (fold change ≥ 2) during rhIFN-β, xylanase and GFP production, along with the processes and reactions they are involved.

Functional description of these genes is given in Table S5.

The complete list of putative organellar genes is given in Table 1.

The complete list of these genes is given in Supporting File S1.

The full list of 299 genes is given in Supporting Information S1.

Diagrams of transgenic and tumor network clusters are shown in Figures 4 and 5. Further information about differentially expressed molecules and encoding genes is given in Table S3.

Average percent dauer formation for each of the 21 target genes is given in Table 1 (actual counts included in Table S2).

In summary, the attractive and appealing idea of fossilized remnants of the primeval and the extended RNA codons in today existing genes is given credit in this work.

A complete list of all identified copy number aberrations and the mutation status of 7 genes is given for the cell lines showing synergistic behavior in Table S1.

Nomenclature of Twinscan predicted genes is given as At.chrA.B.C. EuGene predicted genes are named as At0XeugYYYZZ.

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