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ICGP rediscovered 11 known GBS virulence genes from 119 homologous genes, equivalent to 48 of 416 genes in all three genomes (11.5%).
To assess the ability of Markov segmentation to detect activation/inactivation boundaries, we analyzed a number of known domain pairs, namely sequences of DNA each comprised of a set of contiguous genes (equivalent to one known domain) known to undergo complete inactivation, lying adjacent to another such domain that entirely escapes inactivation, or vice versa.
Incubation of conidia from JSA1 in FA, however, did not result in an increase of mRNA levels for these genes equivalent to that observed in B-5233, i. e., the levels of mfp and pex11 were not significantly higher upon incubation in FA compared to G−.
The EC 3.5.3.19 should be more appropriately named ureidoglycolate amidohydrolase and include genes equivalent to UAH of Arabidopsis thaliana.
This group is comprised of 394 different genes, equivalent to 20% of all genes analyzed (Table S1 – Additional file 1).
Genes equivalent to rpoF and rpoS, responsible for the expression of flagellar genes and genes in the stationary phase of growth, respectively, were not detected in this genome.
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The queuosine biosynthesis cluster comprises five genes (equivalents of E. coli genes queC, ygcF queE), queF, sscR, and folE, Figure 2) required for the biosynthesis of queuosine, a modified tRNA nucleoside found in bacteria and eukaryotes.
It is an excellent candidate as a primary male determining gene equivalent to the sry gene of mammals.
Alternatively, the gene equivalent to SLRP1 from Ciona was already present in a common ancestor of all chordates but may have been lost in the cephalochordate lineage.
The bovine strain 04197 lacked the gene equivalent to Cj0008 (gene designation of strain 11168), which is a gene of unknown function in a metabolic gene cluster relating to a pyridine nucleotide-disulphide oxidoreductase.
Kouressy et al. [ 22] showed that photoperiod sensitivity was affected by dominant alleles of one major gene, equivalent to the Ma 5 or Ma 6 maturity loci identified by Aydin et al. [ 23].
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