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We used the amino acid sequences in the Kyoto Encyclopedia of Genes and Genomes (KEGG) GENES database (as of May 2013).
KAAS is based on reciprocally best BLAST similarity hits against all KEGG orthology (KO) groups of functionally related genes assigned in the KEGG GENES database.
The query is started by selecting the ENSEMBL GENES database and the Mus musculus genes dataset hosted at the EBI, UK.
The KAAS provides functional annotation of genes by BLAST comparisons against the manually curated KEGG GENES database.
The predicted protein-encoding genes were mapped onto KEGG metabolic pathways using the Blastp program against the GENES database.
Liu, B. & Pop, M. ARDB Antibiotic Resistance Genes Database.
Liu, B. & Pop, M. ARDB — antibiotic resistance genes database.
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Data of overlapping genes from 167 bacterial genomes that employ the universal genetic code were acquired from the BPhyOG overlapping-genes database [ 14].
KAAS provides functional annotation of putative genes by BLAST comparison against the KEGG GENES database.
KAAS provides functional annotation of putative genes by BLAST comparisons against the KEGG GENES database.
KAAS (KEGG Automatic Annotation Server, http://www.genome.jp/kegg/kaas/) provided a functional annotation of putative genes by Blast comparisons against the KEGG GENES database.
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