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The final category of highly expressed genes comprises those involved in immune function, e.g. thymosin β [ 68], α macroglobulin and a mannan-binding lectin associated serine protease, which is a complement control module.
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The first class of AS genes comprise those that are both alternatively spliced and differentially expressed (AS+DE).
The second class of AS genes comprise those that are alternatively spliced but constitutively expressed (AS+CE) as a function of activation (Table 1).
By so doing, it is also possible to examine the genes comprising those factors with strong links to clinical phenotypes which will lead to biological insights into this association.
Selected genes comprised those identified from the sequenced genomes of Xanthomonas strains (17 from X. axonopodis pv. vesicatoria strain CFBP5618, 8 from X. campestris pv. campestris strain CFBP5241 and 7 from X. axonopodis pv. citri strain 306) [64] [64].
b Partial genes comprise those sequences that fail one of the first three criteria (above) but meet the fourth.
We used the Genevestigator Clustering Analysis tool to look for relationships between a collection of Arabidopsis genes comprising those listed in Table 1 and a further group that includes the results of a search of the TAIR database for senescence-related genes.
The first set of genes comprises the soxBWXAZYFE gene cluster situated on CHR1 as Rmet_3417 through Rmet_3427.
The group 'Genes' comprises the results with high-scoring alignments in exons of single genes.
All those genes comprising the SigW regulon, including the sigW gene, were upregulated at cold (Additional file 4: Table S4).
In particular, we wanted to identify those genes comprising the primary response to the hormone and are thus likely to be directly induced by 20E.
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