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Summary of dentate granule neuron-specific open chromatin regions and their associated genes compared to other neuronal subtype cells.
The Dp140 network shows a stronger co-expression between genes compared to the networks of Dp427 and Dp71 + Dp40.
Gene set for YS macrophages was obtained from Takata et al. using >5-fold upregulated genes compared to BMDM37 and converted using OrthoRetriever (v1.2; http://lighthouse.ucsf.edu/orthoretriever/).ucsf.edu/orthoretriever/
(C) Representation of differentially alternatively spliced (DAS) genes compared to differentially expressed (DE) genes in protonemata and protoplasts (DAS_PN and DEG_PN), and protonemata and gametophores (DAS_GN and DEG_GN).
Because of this relatively recent (in evolutionary terms) common ancestry, human beings share a remarkably high proportion of their genes compared to other mammals.
By using this method, we found that only 24 (6.25%) genes had substantially shorter CDS in pearl millet genes compared to other species.
However, in the mineral soils of the LC polygons there was a significantly lower relative abundance of pmo genes compared to the rest of the samples.
HIF-2α is an alternative binding partner for HIF-1β and appears to have overlapping but distinct target genes compared to HIF-1α19.
H3K27ac at SCL peaks located in SCL direct DEG genomic loci was higher in the 514 activated genes compared to the 264 repressed genes (Fig. 5b, top) in an SCL-dependent manner (Fig. 5b, bottom).
As expected, the level of these two histone marks was higher at TSSs of the 514 activated genes compared to the 264 repressed genes and SCL-independent (Fig. 5d).
Gene ontology (GO) enrichment analysis provides all GO terms that are significantly enriched among input genes, compared to the background genome (http://www.silkdb.org/silkdb/doc/download.html), and identifies corresponding biological functions.
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