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We have found more genes involved in chemotaxis, cell-adhesion, and cytoskeleton reorganization, for example, Appbp2, Col14a1, Cdh11, Daam1, Lamc1, Tmsb10, and Tnfrsf12a (12% of genes categorized to be involved in chemotaxis, cell-adhesion, and cytoskeleton using Gene Ontology), comparing to YES/NO sub-region (2% of genes).
Moreover, the expression of several genes involved in metabolic processes was higher in the lean controls, including genes categorized to Fatty acid metabolism, Amino acid metabolism, Carbohydrate metabolism, and Coenzyme and prosthetic group metabolism (Figure 2).
Thus, genes categorized to metazoa may also have matches to fungi-specific genes.
A number of genes categorized to this group have already been reported and characterized [ 4].
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Cleaned sequences were sent to BLAST using the nBLAST in NCBI (http://www.ncbi.nlm.nih.gov/); resistant genes were categorized to resistance types by their resistance profiles and sequence similarity [ 15].
Each cell represents the sum of genes categorized according to a specific metabolic pathway.
These differences suggest as future work a more detailed analysis of translationally optimized genes categorized according to the individual strength of CUB.
Table 2 lists the genes categorized according to function: twenty-two genes were involved in cell rescue, defense, death, and aging; 12 in energy; 8 in transcription; 8 in metabolism; 4 in translation; 4 in signal transduction, and 10 could not be classified.
Of these, we selected 858 M. loti genes that were categorized to regulatory function (227 genes), hypothetical protein (479 genes), and unknown protein (152 genes).
Many genes categorized under 'response to stress' and 'response to abiotic and biotic stimulus' based on GO annotation had peak expression at noon.
It was much higher than those reported in European seabass (Dicentrarchus labrax) with only 79 genes (6%) categorized to the GO category "immune system process" after infected with V. anguillarum [ 19] and with 8.7% of the ESTs showing significant similarities with immune genes after Nodavirus infection [ 36].
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