In each permutation, assignments between genes assigned to each single, medium-sized GO category, were randomized.
The genes assigned to each cluster are listed in Table c1 c12.
If we can use all mutants with FST genes assigned to a pathway, we might quickly expand our understanding on the pathways.
Genes assigned to various sub-functional classes of main overviews for F) metabolism overview, G) regulation overview, and H) cellular response overview.
As expected, genes assigned to the metabolism of carbohydrates, amino acids and proteins were more numerous since they are related to the housekeeping functions of all living organisms.
For each subsystem, the relative population was calculated, i.e. the putative genes assigned to a particular subsystem divided by the total number of genes assigned to subsystems.
Increased expression of genes assigned to 'circulation' was observed exclusively in heart tissue.
Genes assigned to the liver associated process 'steroid metabolism' are positively regulated in the liver tissue.
Genes assigned to various ontology terms were derived from AmiGO Version 1.7 on the Gene Ontology website [35].
This profile is computed as the average of expression, per time point, of all genes assigned to the same cluster.
The other two genomes lack genes assigned to COG4074 and thus are unlikely to have this enzyme.
