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In addition to the set of selected genes characterized as informative, we hypothesize that the coordination between different genes and clusters can yield information as to the overall response of the system and whether the system has undergone significant experimental perturbations, thus indicating whether the experimental result has been successful in capturing an underlying perturbation.
This continuous acquisition of genes, and clusters of genes, has led to the co-occurrence of many complementary systems either involved in heavy-metal resistance or other types of stress, requiring intricate fine-tuning of cellular responses on many different levels.
Secondary metabolites genes and clusters identified by SMURF.
The genes and clusters showed random distribution among the chromosomes.
The mean, variance, and CD were calculated for each chromosome arm for both genes and clusters.
Additional file 1: Table of secondary metabolite genes and clusters in T. ophioglossoides.
Similar(30)
Genomic analysis revealed deletions and amplifications in several genes, and clustering analysis based on CNV revealed five clusters.
The expression pattern of cluster 8 (65 genes) and cluster 19 (60 genes) was reciprocal.
Cluster IV contains 404 genes and cluster V contains 373 genes.
It treats noise genes and clustered genes with equal importance and thus it favors methods without scattered genes.
This was used for determining the number of positively expressed genes, differentially expressed genes, and clustering.
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