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The system was constructed with generic database schema design method and coded with Microsoft Visual Basic and Active Server Pages (ASP) programming languages.
Our approach, called DB-MAIN, relies on a generic database model and on transformational paradigm that states that database engineering processes can be modeled by schema transformations.
GeneDB (http://www.genedb.org) is a generic database designed to house annotated and curated sequencing data for small genomes, together with a comprehensive array of genomic and proteomic information, collated from publicly available sources.
STEM owes its flexibility to two key design objectives: a simple yet powerful query expression, retrieval and visualization interface and, secondly, a generic database design that provides the core of the data-driven system.
The paper focuses on sensitivity analysis achieved on a mathematical model for system reliability assessment: the aim of this study is to assess propagation and quantification of uncertainty from input (e.g. nominal values of failure rates taken from a generic database) to output (e.g. system reliability).
Duke is a large contributor to the Network's Generic Database (GDB) of low birthweight infants.
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In general, response rates on web-based/email surveys are low, and rates as low as 2%% are not uncommon [55] particularly when using generic databases.
Successful prediction of structures for example targets from recent CASP (critical assessment of structure prediction) proceedings that are not part of the CATH database or the seed datasets further illustrate the generic, database-independent efficacy of the PCAIN approach (Figure S7).
Due to their sequence similarity these proteins are grouped under the Fic family by generic databases like Pfam.
The transcriptome data can be found in dedicated [e.g. Public Expression Profiling Resource PEPR [ 12]] or generic databases [e.g. Gene Expression Omnibus GEO [ 13]].
Specifically, we use the Nuclear Protein Database (NPD) [ 7] and generic databases including UniProtKB [ 8] and the Human Protein Reference Database (HPRD) [ 9].
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