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To make use of the SAMtools consensus generating pipeline, the backbone scaffolds were split into 10 Kb fragments and mapped back onto themselves also using the BWA-SW program.
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The Laplacian smoothing algorithm was used to make automatically generated pipeline routes fairer.
A two-stage membrane process, coupled with a temperature-swing-adsorption (TSA) as pre-treatment, was designed to generate pipeline quality methane.
Figure 12 shows a top level recursive function Reg-WidthColoringStep which is used to generate pipeline schedules, and minimize the total pipeline register width.
High-level synthesis methodologies have also been used to generate pipeline schedules in RTL, for example in [34], where a variation of the Modulo scheduling algorithm has been used to exploit loop-parallelism by means of executing operations from consecutive iterations of a loop in parallel.
The original non-pipelined CAL actor is then replaced by the newly generated pipelined CAL actors.
The generated pipelined CAL descriptions are finally synthesized to hardware description languages for FPGA implementation.
The best solution is generated with a branch and bound algorithm and finally used to generate pipelined CAL actors which are then synthesized to HDL for FPGA implementation.
pipelineCount, which is the number of generated pipelines; optimalColor, which is the optimal pipeline schedule as an array of operators with the corresponding pipeline stage; minRegWidth, which is the minimum total register width of the optimal pipeline schedule.
asap, which is an array of operators with the corresponding pipeline stage using the ASAP algorithm; alap, which is an array of operators with the corresponding pipeline stage using the ALAP algorithm; order, which is an array of operators ordered according to its mobility over pipeline stages; and generates the following output: 1. pipelineCount, which is the number of generated pipelines; 2.
Taking signal flow graphs (SFG) as input, SODAS-DSP generates pipelined datapaths through iteratively constructive variation of the list scheduling and module allocation processes that iteratively improves the interconnection cost, where the measure of equidistribution of operations among pipeline partitions is adopted as the objective function.
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