Sentence examples for generating phased from inspiring English sources
A pipeline containing several perl scripts were then employed to identify loci generating phased siRNAs from the identified small RNA clusters [ 24].
miRNAs that bind to PHAS loci within the regions generating phased small RNA reads or their flanking 200-nt regions were considered as putative phasiRNA triggers.
As a result, 159 known and novel tobacco-specific miRNAs together with a number of loci generating phased small RNAs were identified.
The phase scores (P values) were calculated following the description in Howell et al. [ 42] In plants, the typical loci generating phased siRNAs are TASs [ 20- 22].
The number of loci generating phased small RNAs was significantly reduced when the phase score was increased to 10 (Table 3).
In addition to confirmation of expression of 27 known miRNA families, we identified 59 novel tobacco-specific miRNA members of 38 families and a large number of loci generating phased 21- or 24-nt small RNAs (including ta-siRNAs).
In plants, TASs are the noncoding transcripts targeted by miRNAs to generate phased small RNAs.
The GENEHUNTER software [ 20] was used to generate phased haplotypes and positions of recombinants.
The program QMsim generates phased genotypes, which allows results from the phasing algorithms to be compared to the true haplotypes for sires and offspring.
Although advanced protocols have been developed that can generate phased genotype data directly, they are still too expensive for routine use in large-scale genotyping projects [ 1].
Similar to what has been found for miRNAs, wounding treated root sample had the most abundant uniquely up-regulated loci that generate phased small RNAs.
