MimoPro solves this problem; it generates overlapped patches with variable number of amino acids in it according to a compactness factor (CF).
In the case of a TSD, both alignment methods (BWA for Illumina reads, BLAT for PacBio reads) generate an overlapped alignment (Additional file 5: Figure S9 A).
To confirm the IR expansion that results in duplication of the genes rps19 and rpl22, PCR amplicons were generated that overlapped the junction of IRa and IRb with the LSC region.
As the evanescent waves from the object transmit through a nanopatterned superlens, the near-field image and the grating pattern are overlapped, generating a moiré pattern, an interference pattern created when two periodic or quasi-periodic patterns are superimposed [77, 78].
Afterwards the lists of enriched regions were overlapped, generating a list of 16290 common enriched regions.
Nevertheless, MCL and R-MCL only generate non-overlapped clusters, and they always assign all proteins into clusters while not all proteins are functionally annotated.
On the other hand, it might be a very tiny starch granule that generate SHG but overlapped with 2PF from surrounding stroma thylakoid.
In this paper, it is applied for generating a hyperplane to classify signal points belonged in overlapped ranges.
Strings of intervals between labels/nick motifs were compared and when they diverged, an outlier p-value was calculated and SVs were called at significant differences (See Methods for details), generating a list of 725 SVs including 59 that overlapped with N-base gaps in hg19 (Additional file 2, Spreadsheet 3).
As shown in Figure 1, the core algorithm includes five steps: dividing antigen surface into overlapped patches, constructing undirected graph on each patch, generating extreme value distribution for each mimotope sequence, aligning mimotopes on each patch and scoring patch, and determining candidate epitope residues in the highest score patch.
