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IR64 has been used as one of the parental lines in generating mapping populations for mapping heat stress tolerance QTLs in some studies (Cao et al. 2003; Ye et al. 2012, 2015), while Nagina22 and its derived mutant lines have been used as parents in generating mapping population by other researchers (Buu et al. 2014; Poli et al. 2013).
Potato (Solanum tuberosum L). late blight resistance has been thoroughly studied, generating mapping data for many Rpi-genes (R-genes to Phytophthora infestans) and QTLs (quantitative trait loci).
We investigated if the ecotype L er was completely immune to P. sojae so that it could be crossed to pss1 for generating mapping populations.
As OPTIMA-Overlap can work with lower quality data (scenario (B) in our simulations; Genome-Builder would typically filter out such data) and also provide improved sensitivity in detecting overlap alignments, we estimate that its use could reduce the requirement for generating mapping data by half.
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The social network is asking for feedback before generating maps for other countries where many people have poor or nonexistent access to Internet infrastructure.
The software also provides output data in graphical form, generating maps of speed, applied volume, and rate.
MAQ and BWA generate mapping qualities.
Plant material used to generate mapping populations is reported in the corresponding section for genetic mapping.
Three independent 10UAS-Cas9 lines were generated, mapping to chromosome X, chromosome 2, and chromosome 3.
The generated mapping file contained Tc gene IDs with assigned MapMan bins (gene functional categories).
This iterative strategy accelerates BWA while retaining the ability to generate mapping quality.
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