Sentence examples for generating an alignment from inspiring English sources

Unlike the RRS method, ReXSpecies 2.0 belongs to the phylogenetic footprinting methods, generating an alignment first.

If analyses start generating an alignment (phylogenetic footprinting), the result, i.e. statements about homology on the sequence level, given by the alignment, may be of low quality.

When evaluating the amount of sequence data that should be used within NCF when generating an alignment, we use protein sequence similarity data.

We further investigated the relationship between the Arabidopsis and rice IQD protein families by generating an alignment of the 61 identified IQD amino acid sequences followed by the generation of a neighbor-joining phylogenetic tree.

We further investigated the relationship between the Arabidopsis and rice PP2C protein families by generating an alignment of the full-length protein sequences of 78 OsPP2Cs and 80 AtPP2Cs followed by the construction of a phylogenetic tree.

The results are then sent to the operation 'prettyplot' (from EBI SOAPLab) to generate an alignment plot, highlighting the aligned sections for the group of ESTs.

Then merge the two matrices to generate an alignment matrix that reveals matches and mismatches between interfaces and interactions.

DragHome has been used to automatically generate an alignment of 88 thrombin inhibitors, for which a significant 3D QSAR model could be derived.

We compared the CB9615 genome with the two published O157 H7 genomes and generated an alignment as described in Materials and Methods, and shown in Figures 1 and S1.

This method identifies the likely fold of the query sequence and also generates an alignment between the sequences of the query protein and the probable template structures.

In order to feed the software, we generated an alignment of alignments, comprising six yeast PATs and their orthologue groups (as defined in ORTHOMCL) making the assumption that they define specificity groups (see below).