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Contours are basic image structures which are important for the segmentation of surfaces by generating a likelihood representation of the locations and orientations of the shape outline boundaries.
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The log-likelihood ratio test statistic for a QTL at a particular map position is displayed graphically to generate a likelihood map or profile.
For each exon, our beta-binomial model generates a likelihood value under three distinct scenarios (copy number = deletion, normal, duplication).
Each version of our statistical models in Equations (1 3) generates a likelihood under the cn = 1, 2, 3 scenarios.
In addition, the linkage disequilibrium (LD) option in PROC HAPLOTYPE was specified which generated a likelihood ratio test for linkage disequilibrium testing a null hypothesis of no association between the SNPs within a given haplotype region.
Each test is based on a model that generates a log likelihood, and tests of G-E interaction are based on standard likelihood ratio statistics.
We first aligned the sequences using ClustalX [33] and generated a maximum likelihood tree using the PHYLIP package [34].
We also generated a Maximum Likelihood tree using Garli [ 34].
The alignment was used to generate a maximum likelihood phylogenetic tree using PROML (PHYLIP [ 88]).
We generated a Maximum Likelihood tree based on 33,164 nucleotide SNPs.
This alignment was used to generate a maximum likelihood phylogenetic tree with 300 bootstraps to determine clade probability.
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