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PSIPRED generates likelihood score of three secondary structure types for each residue, which is used as the input of our CNF model.
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For each DNA segment, the model selected was implemented in PAUP*4.0b10 [35] using Modeltest generated likelihood settings for NJ and ML analyses.
The composite interval mapping program of Windows QTL Cartographer v2.5 (Wang et al. 2006) was used to generate likelihood ratio distributions along all (BC1F1) or part (BC1F2 and BC1F3) of the 12 chromosomes to infer QTL segregating in the populations.
The composite interval mapping program of the WinQTLCart software (Wang et al. 2006) was used to generate likelihood ratio distributions for individual traits to infer QTL positions and to estimate QTL additive (a) and dominance (d) effects.
For each exon, our beta-binomial model generates a likelihood value under three distinct scenarios (copy number = deletion, normal, duplication).
Each version of our statistical models in Equations (1 3) generates a likelihood under the cn = 1, 2, 3 scenarios.
For each unmutated ancestor a, somatic mutation then generates the likelihood function P Q | α) relating the ancestor to the observed query sequences.
SNPTools statistically models sequence data, scores polymorphic loci, and generates genotype likelihoods using a Binary sequence map (BAM -specific BAM -specificure Model (Binomial
Generally, it is quite complex to generate the likelihood confidence region since many function evaluations have to be performed in the surrounding of the parameter estimates θ ^.
The likelihood maps for introduction and exposure and for establishment and spread were combined to generate national likelihood maps for each disease.
The log-likelihood ratio test statistic for a QTL at a particular map position is displayed graphically to generate a likelihood map or profile.
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