Sentence examples for generates a pathway from inspiring English sources

Clicking the link on a pathway name generates a pathway information page that contains detailed gene pathways, hyperlinks to the source pathway annotation database, a list of other genes that are assigned to the same pathway, and p-values for pathway assignments (B in Figure 3).

When using FET, we addressed the question of how to use the collection of p-values for a defined set of pathways to generate a pathway signature with the aim of comparing different microarray experiments.

ChlamyCyc results from a genome-scale metabolic pathway reconstruction to generate a pathway database for Chlamydomonas.

We generated a pathway list showing the 15 most significant pathways in each category (Additional file 5: Table S2).

This method, given a set of pathways and normalized gene expression data, allows the transformation of the data into pathway enrichment scores (a measure of the state of each pathway), generating a pathway expression matrix.

In the case of the biomass reaction, it may not be computationally feasible to generate a pathway fragment collection that traverses all substrates simultaneously, but one may compute cut sets for individual biomass components through separate pathway fragment runs.

The functionally annotated reads obtained from MG-RAST were used to generate a pathway and KO (KEGG orthology) term count matrix to evaluate differential functional expression using edgeR (v. 3.4.2).

The ability to generate a pathway-level model depicting flux of precursors to the formation of a specific polysaccharide requires knowledge of compartmentalization and the component reactions of the pathway.

In order to represent the protein-coding genes with significant DM at the pathway level, the summed β-values of the TSS200 regions of DM protein-coding genes were used to generate a pathway-based deregulation score matrix (PDS matrix).

This positive feedback generates a bistable pathway with two alternative stable steady states the default meiotic state and a more efficient meiotic state.

First, it generates a competing pathway for the plant photorespiratory cycle, as shown by the reduced glycine/serine ratios in transgenic plants expressing the bypass genes.