Sentence examples for generated with the program from inspiring English sources

Our model of the YadA coiled coil, generated with the program BeammotifCC, combines these periodicities into a structure that starts with a pronounced right-handed supercoil and ends with a canonical, left-handed conformation.

The rooted tree is based on a multiple sequence alignment generated with the program Mega6.

The rooted tree is based on a multiple sequence with alignment algorithm MAFFT and generated with the program Mega6.

The images shown in Figures 9 and 10 were generated with the program "ISee!" and were displayed in negative mode (like film).

The rooted neighbor-joining tree using percentage identities was constructed based on a multiple sequence alignment generated with the program Clustal X and MEGA 4. Scale represents percentage substitution per site.

The tree was generated with the program PHYML (v2.4.5) [14].

Prior to the calculation of solvation free energies of 404 organic molecules, their geometries were fully optimized at B3LYP/6-31G* B3LYP/6-31G*ory from the initialeveluctures generated with the CofINA program.

The pMHC top view images were generated with the GRASP2 program [46].

A self-organizing map was generated with the Spotfire program to cluster genes with self-similar expression profiles.

Together with other 16S rRNA sequences obtained from GenBank, a multiple alignment of all sequences was computed using the MUSCLE tool [49] and a phylogenetic tree was generated with the fdnapars program [50], which implements the DNA parsimony algorithm.

Sequence alignments were generated with the ClustalW program [ 39].