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The position of FAPs directly next to the window represents the worst case scenario (highest number of undesired mobility event is generated), the position approximately in the middle of the household corresponds to the best scenario as the signal from the FAPs are highly attenuated by the walls.
Instead of using 3 virtual mice at random locations within the cage, the simulation randomly generated the position of a single virtual mouse that was located within a 10 cm radius of the true source.
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For a query sequence, we generate the position specific scoring matrix as input features by searching against SWISS-PROT database using the PSI-BLAST tool.
Target sequences were scanned against the reference data sets UniRef100 Release 15.9 to generate the position specific scoring matrices (PSSMs) using Position Specific Iterative BLAST (PSI BLAST) program Release 2.2.12 [28].
The distance and orientation distributions were then sampled with replacement to generate the position of the virtual mouse relative to the real mouse in the single mouse experiments.
After randomly generating the positions of the starting Ras molecules on the lattice, individual Ras molecules are chosen at random and attempted to move to a new location on the lattice.
We then created a simulated social environment by randomly generating the positions of three virtual mice at the time of each vocal signal.
When going from previous iteration to the next iteration, we included only those hits whose expect value was 0.001 or less to generate the position-specific scoring matrix that can be used in the next iteration.
Step 7: calculate the fitness function of updated position and generate the particle positions for the next iteration (in (15)) and set k = k + 1.
After transmission of the reference, a "search window" is generated around the position in the decoder map.
Then, 49 nodes are generated and the position (x,y) of each node is randomly specified within the square area.
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