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In an early example of video animation in a Hollywood movie, the Rutt/Etra generated the logo of the fictional Union Broadcasting System in "Network," Sidney Lumet's 1976 picture.
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The following numbers of promoter sequences were used to generate the logos: 25 sites of Sinorhizobium meliloti, 59 sites of E. coli, 142 sites of B. subtilis, 41 sites of Chlamydia trachomatis, 35 sites of M. pneumoniae, 25 sites of Prochlorococcus marinus, 21 sites of Campylobacter jejuni and 23 sites of M. hyopneumoniae.
To investigate the substrate specificity of acetylated lysine sites, WebLogo [ 26] was applied to generate the sequence logo of positive training dataset presenting with 15-mer flanking sequences.
The logo below the text parodies the logo of the real International Olympic Committee.
(11) were obtained to generate the sequence logos for all the annotated motifs of an RBP.
The web based program WebLogo3 from the University of California at Berkeley was used to generate the sequence logos [ 91].
WebLogo [28], [29] is adapted to generate the graphical sequence logo for the relative frequency of the amino acid at each position around the ubiquitylated sites.
We used the enoLOGOS program [ 60] to generate URS logos of detected URS motifs.
The alignments of the repeats of each CRISPR pairs were visualized with WebLogo version 3.0 (http://weblogo.threeplusone.com/create.cgi), a Web-based application that generates graphical representations (logos) of the patterns within a multiple sequence alignment [52].
A sequence logo was generated at the bottom of the alignment to show the frequency of certain amino acid substitution at a position, indicated by the height of the letter [ 66 ].
To calculate the specificity profile, we used the enoLOGOS web tool to generate a normalized sequence LOGO of the P5 P2′ sequence preferences.
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