The Bayesian analysis was run using the Metropolis coupled Markov chain Monte Carlo (MCMC) algorithm from randomly generated starting trees for 1,500,000 generations with sampling every 100 generations.
We used 21.81 ± 1.24 Million years before present (MYBP) as the time of divergence of Aotus from Cebus/ Saimiri, and 19.05 ± 1.5 MYBP as the time of divergence of Cebus from Saimiri [ 42], with a normal prior distribution, a randomly generated starting tree and chain length of 20,000,000 generations with parameter samples every 1,000 steps.
Two separate MC3 runs with randomly generated starting trees were carried out for 6 M generations each with one cold and three heated chains.
The general parameters that we used in *BEAST were a randomly generated starting tree, a Yule process for the species tree prior, and a piecewise linear and constant root population size model.
Multi-signal ESWC reconstructions were generated starting from the multi-channel image data and the standard SWC reconstructions.
into a model able to employ suitable g-functions generated starting from the Finite Line Source solution.
The statistical data on strength are generated starting from statistics on material properties and using the Monte Carlo simulation method.
By statistically averaging this weight over several randomly generated starting configurations, we compute the relative difficulty of entering and leaving a given binding configuration.
In our analysis, we tracked the shareholder returns each CEO generated, starting from day one on the job, along with the change in each company's market capitalization.
A homology model of a Kv7.2 subunit was generated starting from a Kv7.1 homology model which integrates the crystal structure of the Kv7.1 proximal C-terminus27, using the SWISS-MODEL software64.
A structural model based on 20 conformers (Supplementary Fig. 7, Table 1) was built using the distance geometry software CYANA66, where 100 randomly generated starting conformations were minimized against (i) NMR proton distance constraints derived from NOESY spectra and (ii) predicted dihedral angles, Ψ and ϕ, obtained from proton, carbon and nitrogen chemical shifts67.
