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Random index (RI) is the consistency of the randomly generated pair wise matrix and is dependent on the size of the matrix as given in Table 2.
For a generated pair of epistatic SNP values, a set of 998 SNPs that were assigned random values was appended to simulate SNPs that are non-informative with respect to the disease status.
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The RI is the random index representing consistency of a randomly generated pair-wise comparison matrix.
RI = is the consistency index of a randomly generated pair-wise comparison matrix.
Then, CR can be calculated using Eq. (5): CR = frac{CI}{RI} (7 where, RI is the random consistency index obtained from a randomly generated pair-wise comparison matrix.
The generated pairs of scans have overlap rates of 39, 51, 31, 56, 25 and 29%.
We generated pairs of chimeric isoforms that bind to each other (heterophilic) but not to themselves (homophilic).
We generated pair-end reads using Illumina HiSeq2000.
To investigate this topic further, we generated pair-wise comparison on aligned sequences of the repeated regions, using the repeated region of A. pernyi as a reference.
For the human genome, we generated paired reads with insert size 500 and 20× coverage.
The generated paired-end reads were mapped to the Marburg 168 reference genome using MAQ software.
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