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A total of 250,000 virtual compounds was generated and analyzed as described earlier.
Genotypes were generated and analyzed as described above.
The protein models were generated and analyzed as formerly reported [ 28].
Amplicons for 454 (Roche) sequencing were generated and analyzed as described previously (Tuorto et al, 2012).
Gene expression array data were generated and analyzed as described [ 2].
In total, 2394 models (= 42 datasets × 57 algorithm options) were generated and analyzed as described in the methods section.
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The system was subsequently generated in about 24 h, and analyzed as described in the general procedure.
Our assumption was that most business rules would have complex structure and their interpretation would require new facts to be generated and analyzed, similarly as it happens in expert systems.
cDNA was generated and analyzed by qRT-PCR as above.
For example, subnetworks can be generated and analyzed by setting ligands as the source nodes and expanding the subnetworks in steps in the downstream direction.
As a result several recovery options were generated and analyzed.
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