Sentence examples for generated an alignment from inspiring English sources

We compared the CB9615 genome with the two published O157 H7 genomes and generated an alignment as described in Materials and Methods, and shown in Figures 1 and S1.

In order to feed the software, we generated an alignment of alignments, comprising six yeast PATs and their orthologue groups (as defined in ORTHOMCL) making the assumption that they define specificity groups (see below).

To determine whether this difference may be due to divergent primary sequences, we generated an alignment of the β1-β2 region from A2 and the human A3 proteins, indicating the β1-β2 interactiobservedrved in the crystal structures of A2 and the various structures of the A3G C-CDA (Figure 3).

This generated an alignment of the protein sequence that can be modelled with known related structures.

For phylogenetic analysis, we generated an alignment including the 40 newly generated and 20 additional mtDNA genomes downloaded from Genbank.

Taking advantage of the increasing number of sequenced mammalian genomes, we generated an alignment of repeat A sequences from 27 mammalian species (Additional file 2: Figure S2A).

The results are then sent to the operation 'prettyplot' (from EBI SOAPLab) to generate an alignment plot, highlighting the aligned sections for the group of ESTs.

Then merge the two matrices to generate an alignment matrix that reveals matches and mismatches between interfaces and interactions.

DragHome has been used to automatically generate an alignment of 88 thrombin inhibitors, for which a significant 3D QSAR model could be derived.

This method identifies the likely fold of the query sequence and also generates an alignment between the sequences of the query protein and the probable template structures.

Similarly, MegaBLAST requires a minimum of 28 contiguous matches to generate an alignment.