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Subsequently, GATK28 was used to call any potential variable sites between reads and reference (HaplotypeCaller) and to ultimately generate a consensus sequence (FastaAlternateReferenceMaker)We called genotypes and generated a consensus sequence using GATK (Picard v.2.6).
Notably for Gayal, we mapped the obtained reads to Bos taurus mitochondria genome using SOAP, and generated a consensus sequence that was used as the super gene of Gayal.
In this study, the authors generated a consensus dataset of hexamers from previous studies investigating ESEs and ESSs.
To specifically map the sites where the absence of PNGS in infant sequences occurred, we generated a consensus sequences from each subject and then aligned this sequence from each subject to the subtype B HIV-1 HXB2 sequence.
However, Seg-7 from the Heeten blood sample from (NET2008/06) generated a consensus Seg-7/VP7 sequence that was identical to Seg-7/VP7 of BTV-8 from the Netherlands 2006 (NET2006/04) and 2007 (NET2007/01), but only showed ∼80.5% nt identity to the BTV-6 isolates from the same sample (Figure 6).
Using the multiple alignment function of RSmatch, we generated a consensus structure for each structure group.
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Eleven million generations were completed, and trees were collected every 5,000 generations, after discarding trees corresponding to the first 25% (burn-in), to generate a consensus phylogenetic tree.
The community structure of the parcellated connectome was identified using Infomap clustering across sessions to generate a consensus clustering8.
The spirit of pulling together and moving on generates a consensus to suppress divisive issues and support the existing society.
Despite these advances it remains difficult to generate a consensus view of plant formin activities and cellular functions.
The only way to ensure that the full range of interests could be implemented was to generate a consensus on how development should proceed.
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CEO of Professional Science Editing for Scientists @ prosciediting.com