Sentence examples for generate pathway from inspiring English sources

A Perl script was used to generate pathway image files with colored genes through KEGG API.

In a second step MassTRIX then calls the KEGG/API (http://www.genome.jp/kegg/soap/) to generate pathway maps of the annotated masses.

For the former case, we demonstrated that the CMAP protocol can be used to generate pathway architectures capable of adaptation to persistent signal.

MassTRIX calls the KEGG/API (http://www.genome.jp/kegg/soap/) to generate pathway maps, where the annotated compounds and genes are highlighted using different colors-thus differentiating between organism-specific and extra-organism items [15].

To this aim we used EuGene to generate "Pathway Signatures", recapitulating the biologically meaningful pathways related to some clinical/biological variable of interest, and used them in an analysis workflow to compare different microarray experiments.

We propose a novel method to compare microarray experiments at the pathway level, this method consists of two steps: first, generate pathway signatures, a set of descriptors recapitulating the biologically meaningful pathways related to some clinical/biological variable of interest, second, use these signatures to interrogate microarray databases.

However, this set of genes was not sufficient to generate pathways affected by TWEAK.

In cases where only a starting conformation is known, several different types of force-inducing protocols have been used to generate pathways from a starting conformation.

Second-generation methods improve on this by using information from the entire experiment (all genes, ranked according to a gene-level statistic) to generate pathway-level statistics that capture coordinated changes in the expression of genes in a pathway or gene set.

IFDSD and ILP always generate pathways satisfying this request whereas EC can not.

Furthermore, there have to be movements of the helices in the transmembrane region to generate pathways for the entry or the release of the Ca2+ ions [ 15].