Sentence examples for generate a pathway from inspiring English sources

When using FET, we addressed the question of how to use the collection of p-values for a defined set of pathways to generate a pathway signature with the aim of comparing different microarray experiments.

ChlamyCyc results from a genome-scale metabolic pathway reconstruction to generate a pathway database for Chlamydomonas.

The functionally annotated reads obtained from MG-RAST were used to generate a pathway and KO (KEGG orthology) term count matrix to evaluate differential functional expression using edgeR (v. 3.4.2).

In the case of the biomass reaction, it may not be computationally feasible to generate a pathway fragment collection that traverses all substrates simultaneously, but one may compute cut sets for individual biomass components through separate pathway fragment runs.

In order to represent the protein-coding genes with significant DM at the pathway level, the summed β-values of the TSS200 regions of DM protein-coding genes were used to generate a pathway-based deregulation score matrix (PDS matrix).

The ability to generate a pathway-level model depicting flux of precursors to the formation of a specific polysaccharide requires knowledge of compartmentalization and the component reactions of the pathway.

We generated a pathway list showing the 15 most significant pathways in each category (Additional file 5: Table S2).

This method, given a set of pathways and normalized gene expression data, allows the transformation of the data into pathway enrichment scores (a measure of the state of each pathway), generating a pathway expression matrix.

Clicking the link on a pathway name generates a pathway information page that contains detailed gene pathways, hyperlinks to the source pathway annotation database, a list of other genes that are assigned to the same pathway, and p-values for pathway assignments (B in Figure 3).

For the generation of static pathway map images, users should use the mapping tool to generate a custom pathway map, and download this image to make permanent modifications.

One could use Polyphen output for variants in the input dataset, and BioBin with generate pathway "A" risk variants and pathway "A" non- risk variants.