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The log-likelihood ratio test statistic for a QTL at a particular map position is displayed graphically to generate a likelihood map or profile.
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Contours are basic image structures which are important for the segmentation of surfaces by generating a likelihood representation of the locations and orientations of the shape outline boundaries.
For each exon, our beta-binomial model generates a likelihood value under three distinct scenarios (copy number = deletion, normal, duplication).
Each version of our statistical models in Equations (1 3) generates a likelihood under the cn = 1, 2, 3 scenarios.
In addition, the linkage disequilibrium (LD) option in PROC HAPLOTYPE was specified which generated a likelihood ratio test for linkage disequilibrium testing a null hypothesis of no association between the SNPs within a given haplotype region.
The alignment was used to generate a maximum likelihood phylogenetic tree using PROML (PHYLIP [ 88]).
This alignment was used to generate a maximum likelihood phylogenetic tree with 300 bootstraps to determine clade probability.
These selected sequences were used to generate a maximum likelihood tree to show the relationship of Vilya to these homologs.
The first two strategies identify specific genes or genomic intervals as candidates, whereas network approaches generate a relative likelihood that every gene in the genome is causal.
This constraint tree was used to generate a maximum likelihood best tree with RAxML, using the same evolutionary models as above.
This file was used as an input to generate a maximum likelihood tree using RAxML [ 25] with the following parameters: –m (substitutionModel) GTRCAT, –b (bootstrapRandomNumberSeed) 12345, -# (NumberOfRuns) 100, –c (NumberOfCategories) 25.
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