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The foundations to generate a Constraint Satisfaction Problem (CSP) from a PN are given.
This may generate a constraint on the harmonizing measurement techniques [ 52].
To generate a constraint set for network inference, we excluded the proteomic entities that do not respond to at least a single perturbation condition from the network models.
Nonsynonymous (d N ) and synonymous (d S ) substitution rates for 48 plastid-encoded rpl32 sequences and three nuclear-encoded sequences (rpl32 from Bruguiera was not used in the rate variation estimation because there were insufficient plastid data to generate a constraint tree) were calculated in PAML v.4.8 [ 61] using codeml option with codon frequencies estimated with an F3 × 4 model.
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Another benefit of coupling systems-biology models with databases, and a corresponding advance of our model, is that generating a constraint-based model from a database that has associated web-based visualization tools leads to a literate model (by analogy to Knuth's notion of literate programming [ 18]).
If we denote GDS as the given data set and consider the background knowledge BK, we can use GDS and BK to filter out the inconsistent constraints in CS, and generate a filtered constraint set FCS: (2) FCS = { c | c ∈ CS, c s.
Otherwise, we generate a cannot-link constraint.
This requirement, however, generates a space constraint to accommodate additional elements.
The Genesis II condylar constrained implant generates a rotational constraint with the consequence of rotational load acting at the tibial post.
These constraints generate a multi-rate sampling problem for the soft sensor design.
When these new constraints are fed back through Putnam's argument, he will once again be able to generate a model which "satisfies" these constraints.
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