2) The authors claim that their analysis was unbiased and generated a catalogue of somatic mtDNA mutations.
Applying SAGE to the zebrafish fully-grown ovarian follicle generated a catalogue of 27,486 sequenced tags, ZEBRAOV.
Using Pindel v. 0.2.4p (Ye et al. 2009), we generated a catalogue of 23,454 structural variants (SVs) (≥50 bp), including 12,068 and 10,778 deletions and 278 and 330 insertions for Silkie and L2, respectively, and also combinations of SVs using stringent SV detection constraints (fig. 4, table 3, and supplementary table S7, Supplementary Material online).
The principal aim of this study was to generate a comprehensive catalogue of genes that are transcriptionally regulated during Plasmodium development in the mosquito midgut.
In order to generate a primary catalogue of microbial genes from the fish intestines, and explore the data differences caused from the fasting challenge, we first performed de novo assembly for the high quality reads.
While this is currently limited to those regions of the genome that can be assembled from short-read sequence data, as sequencing technologies improve we expect to generate a complete catalogue of variation in the CC.
In order to generate a large catalogue of segregating SNPs, we re-sequenced 243 chickens from 24 chicken lines derived from diverse sources (experimental, commercial broiler and layer lines) by pooling 10 15 samples within each line.
To generate a complete catalogue of annotated lncRNAs, annotations from five public databases, including Ensembl (28), RefSeq (37), UCSC Genes (38), NONCODE (27) and fRNAdb (39) were obtained in browser extensible data or gene transfer format files.
As of March 2010, aside from a mixed-species collection of ≈56,000 nucleotide sequences on NCBI (≈ 37,000 of which are Sanger EST sequences) and which contain extensive redundancy, the largest effort to date to generate a comprehensive catalogue of expressed genes in a single Eucalyptus species was based on 454 sequencing of cDNA fragments from E. grandis trees [ 15].
