Our sys- tem utilizes several extensions to the general- purpose sequence-to-sequence (S2S) architec- ture to model the latent content selection pro- cess, particularly different variants of copy at- tention and coverage decoding.
A view of basal ganglia as a general purpose sequencing mechanism is compatible also with computational sequencing models of basal ganglia [ 16- 19].
In pipelines 1 3, reads with a viral hit are then screened against a comprehensive general-purpose sequence database (NCBI's Non Redundant, NR) in order to further rule out their human origin.
However, PSSM is rather designed for general-purpose sequence comparison using PSI-BLAST, and it may not capture all the evolutionary information for predicting DNA or RNA-binding residues, which appear to have specific biochemical properties.
The NUCB1 and NUCB2 sequences obtained were aligned using ClustalW2 general purpose multiple sequence alignment program for DNA or protein [22].
We have used ClustalW (www.ebi.ac.uk/clustalw), a general purpose multiple sequence alignment computer software for proteins, which produces biologically meaningful multiple sequence alignments of divergent sequences.
Multiple amino acid sequence alignments were established with CLUSTALW2, a general purpose DNA/protein multiple sequence alignment program (http://www.ebi.ac.uk/Tools/msa/clustalw2/; [ 90]) using standard parameters.
Liao Y, Smyth GK, Shi W. FeatureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
Liao, Y., Smyth, G.K. & Shi, W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
Liao Y, Smyth GK, Shi W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
