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Analysis of variance revealed significant interactions between light and species nested within genera for all growth measures (Table 1), indicating that homoblastic and heteroblastic species within each genus differed in their response to light.
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Principal components analysis (PCA) of coral health across all hard coral genera for (a) all sites that were surveyed at the two time points, (b) all sites (except Bremer Bay) at the second time point only, and (c) Cygnet Bay only at the two time points to compare coral health in the intertidal and subtidal environments.
Fig. 2 Average relative read abundance (n = 13) of the most abundant genera common for all six sample categories.
Relative rate tests were carried out among all genera and for all accessions individually used for phylogeny in GRate 0.4 (http://bioinfweb.info/Software/GRate; [ 56]).
We removed genera for which all species are commonly commensal with humans (e.g., Mus).
Figure 4a shows the relative phylum abundance and Figure 4b the relative genus abundance of the most abundant genera (see Table S1 for all genera detected at bootstrap level 50%).
The ten bilaterian genera were tested for all 52 introns, two cnidarian genera were tested for 22 and 29 introns respectively.
The highest accuracies occurred from TM Bands 3, 4, and 5 (61.0% for deciduous genera, 67.8% for all classes) or from the difference in BGW (61.0% for deciduous genera, 67.8% for all classes).
This index is a computed Pearson correlation that is suitable for abundance data (in contrast to presence-absence data) based on a large database, without the assumption that the total number of sampled genera is constant for all sites but gives equal weight to all site groups (it is group-equalized) (Cáceres and Legendre 2009).
Comparison of the number of genera per order for all orders.
The second measure was calculated at two levels: first, for only those genera in which both species amplified and second, for all genera regardless of amplification, thereby incorporating both the level of sequence divergence and universal application into this measure.
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