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A gene transition may fire if it is enabled.
It also implicates that the time delay induces the gene transition from the "on" state to the "off" state.
A circle ○ represents a gene place, a triangle Δ represents a drug place, a bar | represents a gene transition and a bar || represents a drug transition (Fig. 1).
In the same way, a gene transition fires by removing gene tokens from its input places and creating new gene tokens which are distributed to its output places.
In the Amy32b gene transition from watery ripe to the milky ripeness stage of seed development was followed by the decrease of TBP binding along the whole gene, especially in the promoter region and intron II.
A gene transition t j ∈ T G in a marked EPN C= P, T, I, O) with marking μ is enabled if for all p i ∈ P, μ G (p i )≥#(p i, I G (t j )).
Similar(54)
Another possibility is for Pol IIs that are part-way through elongation when the gene transitions to the inactive state to dissociate from the DNA.
However we observe that no single gene transitions can define the pathway but a coordinated set of genes that determine the path taken when the pentose phosphate cycle is subjected to oxidative stress.
"If we were to find many of the same gene transitions across viviparous reptiles," Brandley says, "then we could say that this is a pretty old pattern, and something similar was probably going in mammals".
An example of the 10-gene transition network reconstructed using Friedman's algorithm is shown in Figure 3a.
For pseudogenes, ω is equal to 1 and transition to stop codons is allowed, whereas for genes transition to stop codon is not allowed.
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