Exact(23)
The differences among genes are differences in the number and particular order of the four nucleotide types in a gene string.
The 5' flanking gene string in M. haemolytica serotype 1 str.
Another gene string that is often within the syntenic region of hisHb, tyrA, and aroF is cmk > rpsA.
In M. granulomatis, we found remnants of the gene string hslVU- lapB- lktC in the xylB- lktC intergenic region.
Sakai and S. Typhi strain Ty2 where it is connected to the conserved gene string artP- artI- artQ- artM.
Xie et al. [ 5, 6] asserted that one such ancestral gene string that has resisted scrambling forces is hisH b > tyrA > aroF.
Similar(36)
The minimum edit distance between two gene strings in DNA sequences represents the number of editing operations (insertion, deletion or substitution) between the query and original strings.
The GeneSyn program [ 71] allowed the detection of gene strings conserved in chordate mtDNAs.
Protein strings are generally shorter than gene strings and their similarity patterns are often single conserved amino acid positions separated by one or two variable positions.
A program designed to predict gene function by building gapped local alignment of genome contexts between prokaryotic genomes, followed by studying the conserved gene strings provided significant predictions, yet it could not cover the majority of genes either [ 33].
Significant sequence similarities between unique genes or gene strings in one genome and intergenic regions located at the corresponding sites in other genomes were considered to be remnant DNA.
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