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If the best match is a distantly related organism, instead of one expected by vertical inheritance, then the gene is categorized as likely horizontally acquired [ 18] (see Additional file 1: Figure S1A, B).
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When only one allele was expressed, the gene was categorized as showing monoallelic expression.
If the highest score/self-alignment score-ratio was above 0.6, the gene was categorized as correct.
When the two alleles were expressed equally (less than two-fold difference), the gene was categorized as showing biallelic expression.
The expression levels of each gene were categorized as low or high at the 33.3rd, 50th, or 66.7th percentiles.
Each gene was categorized into one of four levels (undetectable 0; low, 0 1.3; medium, 1.3 3; or high, ≥3).
Each gene was categorized after comparison of A2 and D5 expression to the total expression of the polyploid.
A gene was categorized as a development gene if it has a GO (gene ontology) function which includes a keyword of 'development'development
Genes were categorized using NCBI Entrez Gene.
Then the genes were categorized using Gene Ontology annotations program (http://apps1.niaid.nih.gov/David/gochart).nih.gov/David/gochart
The 37 target genes were categorized into 13 groups based on their COG functional annotations.
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CEO of Professional Science Editing for Scientists @ prosciediting.com