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Gene identifiers for 126 Arabidopsis thaliana R2R3- and R1R2R3-MYB genes were obtained from Stracke et al. (2001).
Additional pathways were identified using the David Bioinformatics Database http://david.abcc.ncifcrf.gov/[ 73] through a gene set search using the ensembl gene identifiers for the set of human orthologs of the feline sequences we identified.
One important advantage of Gitools data importers is that it allows the user to choose among many different types of gene identifiers for many different organisms.
The database contains all raw data, as well as links between unique gene identifiers for mRNA and protein, functional categories, and summary of function.
The NCBI Entrez gene database (http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene) was then searched to find Entrez gene identifiers for those genes.
The gene identifiers for the 12 C. hominis genes selected by these criteria are listed in Table 1, as well as their C. parvum orthologs, with which subsequent analyses were conducted.
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Summary of the gene identifier for each cell type is shown in a bar chart under the map.
a Gene identifier for the tomato gene containing the sequence on the TOM1 array, from [53] b Micrarray feature identifier from Alba et al. [13].
Nucleotide sequences from the N domain exons can be used as gene identifier for the non-annotated genes (Additional File 4).
To obtain the most likely Ensembl gene identifier for each GenBank record, BLAT was used to map each GenBank sequence to Ensembl/EnsemblGenomes transcripts, keeping only the best matching gene ID.
The GM corpus (e.g., [ 34]) includes mention annotations but not gene identifiers of the target document; the GN corpus contains annotations for the gene identifiers but not their associated mentions.
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CEO of Professional Science Editing for Scientists @ prosciediting.com