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The evaluation was based on time-lagged expression correlation between the gene expression series of the TF and that of the mature miRNA (see Methods).
*GSE: gene expression series number in GEO (gene expression omnibus) *Eight-digit number represents PubMed id of a reference Values are chi-square values from log-rank test.
Four different gene expression series were identified that provided data from RF-ve polyarticular, oligoarticular JIA and controls in previously published studies (GEO).
The 160 differentially expressed genes were further used to cluster the patients of the whole data set and three publicly available breast cancer gene expression series into two groups by an unsupervised clustering method.
Furthermore, the analysis would be much more compelling if compared directly to data from at least the W303 gene expression series, and preferably additional aneuploid lab strains (for example, the Hughes et al. deletion collection strains that are aneuploid, or some of the aneuploids isolated from experimental evolution).
GEO: Gene expression omnibus; GSE: Gene expression Series; GO: Gene ontology; BP: Biological processes; MF: Molecular functions; PW: pathway, BR: Breast cancer prognostic signature; ER: estrogen receptor.
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We conducted analysis with the gene-expression series dataset deposited in the NCBI's Gene-Expression Omnibus and are accessible through GEO Series accession number GSE28418.
Statistical inference of transcriptional regulatory networks from a combination of gene expression time series, promoter sequence and binding specificity data has been studied in [85] [87], [63].
The signals corresponding to gene expression time series were re-sampled to obtain 32 time points and, after decomposition, 32 wavelet coefficients on 5 levels (scales).
The microarray data have been deposited in the NCBI Gene Expression Omnibus (http://ncbi.nlm.nih.gov/geo) and are accessible through Gene Expression Omnibus series accession number GSE14796.
Data is available from Gene Expression Omnibus series GSE10893.
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