Sentence examples for gene expression estimate from inspiring English sources

Finally, transcript expression levels of the same gene are summarized to give a gene expression estimate.

Because every sample was replicated by four arrays, we took the average of replicates as gene expression estimate.

These outliers also correspond to arrays which fall outside the primary cluster on PCA gene expression estimate plots (Fig. 3B Points F H).

When the F/RPKM values are log transformed, the magnitude differences will be decreased and the importance of the preparation factor for modeling each gene expression estimate will appear smaller relative to other factors.

Thus, the ncRNA reads were filtered from our data set, and the remaining reads that aligned to mRNA regions were used for the gene expression estimate (Table  1 and Additional file 3: Table S1).> -wrap-foot> *Number of reads generated in the sequencing of each replicate.

In the Affymetrix systems the signal from one badly designed probe, which may be based on inaccurate data from a sequence database, can be easily eliminated from further analysis [ 41] without significant decrease in the precision of gene expression estimate, while in the Agilent systems the same design glitch might cause significant difficulties in the evaluation of gene expression levels.

Technical noise may be modeled with a log-normal function to adjust gene expression estimates.

Our results demonstrate that probe selection improves gene expression estimates from exon arrays.

Our analysis shows that including all the probes to compute the gene expression indexes often results in low gene expression estimates across all the samples.

These steps involving background correction, normalization, and summarization are often combined into a single all-in-one preprocessing algorithm that takes raw probe intensities as input and produces gene expression estimates as output.

This procedure resulted in logarithmised gene expression estimates for 12 095genes.