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Gene evidence and predicted gene structure were combined using EVM [ 24].
The DAVID functional annotation clustering tool [22] and the gene evidence retrieved from the HuGE Navigator database [21] jointly identified three PRmiRs which were more closely related to MI (Figure 3).
Some form of biological gene evidence supported the majority (14,084, 92%) of the OGSv3.2 genes.
All predicted gene evidence was integrated by GLEAN [ 62] to get non-redundant data [ 63].
CGE is the principal investigator, and performed the computations to create gene evidence tracks and consensus gene sets.
Apollo2Go, a web service adapter developed for the MIPS PlantsDB, allows Apollo clients to obtain GAME-XML-formatted gene evidence from a central database [ 31].
Similar(38)
Transgenic lines including the fusion gene evidenced the same lacZ expression pattern.
The importin-13-like gene evidenced the largest number of exons and introns (28 exons and 27 introns).
In the absence of functional information for most of the identified rAc-DAF-16 linked genes, evidence of differential expression is the most important source for prioritizing future investigations.
As seen in Additional file 2: Figures S3 and S4, each of the GiGA modules is separated into unconnected modules from the conversion between the simple gene-gene evidence graph used in the analysis to the bipartite metabolite-reaction representation.
For the other genes, evidence of associations has been described in at least two independent samples.
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