Sentence examples for gene browser from inspiring English sources

Conservation between mouse and human gene sequences was determined by locating the κB site in the mouse genome using Blat and displaying the comparative sequences at that site in the University of California Santa Cruz gene browser (http://genome.ucsc.edu/).ucsc.edu/

SNP information for the computational analysis was obtained from NCBI dbSNP and Ensemble Gene Browser.

ROV was responsible for gene browser design and implementation, tRNA analysis and M. perniciosa sketches.

GGLC was responsible for gene models predictions, Genome Threader analysis, MCL clustering analysis and gene browser design and implementation.

The Generic gene browser, GBrowse, JMOL for structural visualization and TREEVIEW for phylograms have been integrated for clear perception of retrieved data.

We also explored the OlfC genes in the draft genome of O. niloticus (Nile tilapia), which was available in the Ensemble gene browser (http://www.ensembl.org/Oreochromis_niloticus/Info/Index/).org/Oreochromis_niloticus/Info/Index/

Extracted sequences, predicted genes, browser tracks and additional metadata, such as gene names recognized in full-text articles by GNAT (Hakenberg et al., 2008), can be searched, downloaded and browsed at http://www.text2genome.org.org

An additional inspection using the Yeast Gene Order Browser (http://wolfe.gen.tcd.ie/ygob/) also suggests that BAT1/BAT2 could be in a duplicated block.

The genomic contexts of yeast ADH genes used in this study were obtained from the following databases: the Candida database at the Broad Institute (Candida species and Debaryomyces hansenii), the GeneDB (Candida dubliniensis), the Map View of NCBI (P. stipitis and P. guilliermondii), and the Yeast Gene Order Browser (some yeast species in the Saccharomyces complex).

The coordinates of all 11321 CNV calls that passed the filters above were mapped from Build 35 to Build 36 of the human genome (Batch Coordinate Conversion tool, UCSC Genome Bioinformatics Group) in order to extract the number of calls that overlapped each gene (Table Browser tool, UCSC Genome Bioinformatics group).

Orthologous genes were identified using the Candida Gene Order Browser [ 19].