Project name: Dissecting an alternative splicing analysis workflow; Project home page: ; Operating system(s): Platform independent, require at least 8 Gb RAM; Programming language: R 2.7.0, Bioconductor 2.2.
Statistical computations were made using the GB Stat™ program (Dynamic Microsystems, Inc, Silverspring, Maryland, USA).
Statistical computations were made using the GB Stat™ program (Dynamic Microsystems, Inc., Silverspring, MD, USA).
Statistical computations were made using the GB Stat™ program (Dynamic Microsystems, Inc, Silver Spring, MD, USA) and SAS software, version 9.1 (The SAS Institute, Cary, NC, USA).
Statistical computations were made using the GB Stat program (Dynamic Microsystems, Inc., Silver Spring, MD, USA) and SPSS software, version 21 (IBM Corp., Armonk, NY, USA).
The computation time was respectively ~4, 6 and 10 s for neighboring marker (NM), 2-marker haplotypes (HAP2) and 4-marker haplotypes (HAP4) to predict the genotypes/haplotypes on a dual-processor 64-bit Windows PC with 2.40 GHz and 36 GB of RAM; programs were compiled for 32-bit.
All experiments are implemented on a personal computer with Inter (R) Core (TM) Duo 3.2 GHz CPU and 4 GB memory and programmed using Visual Studio 2010 C++, and the MILP solver is CPLEX 12.5.
This file includes the name of the populations, acronyms used, existence of Herdbook, year of the establishment of the Herdbook, census, geographic distribution (GD), use of artificial insemination (AI), existence of gene bank (GB), existence of conservation programs (CP) and existence of selection programs (SP).
The computation is done on a computer with Intel® Core™ i7-2600 CPU 3.40 GHz and 8.00 GB RAM, and the program is coded with C language and compiled with Intel® C++ Compiler.
Although the team did graduate four starters, including defensemen Will Swindell (50 ground balls and 20 caused turnovers) and Stephen Loudon (25 GB, 16 CT), the program does welcome back its entire attack of junior Dylan Molloy (62 goals and 30 assists) and seniors Henry Blynn (38 G, 14 A) and Kylor Bellistri (35 G, 7 A). .
Table S1 Disk space (GB) required for each program Table S2 Peak-calling results for the test data.
